species:   Comil
pid:       PID1165
parent:    milR33
paralog:   
locus:     NW_006271975.1:2273899-2274031
matures:   ['UGUAGUUGUAUUGUGUAAGUU', 'CUUACACAAUACAACAACUUC']
srr:       SRR8054057
genome:    /Users/jax/+Genomes/Fungal_genomes/Comil.GCF_000225605.1_CmilitarisCM01_v01_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054057.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054057.cram NW_006271975.1:2273899-2274031

392 out of bounds
75 alignments
54 proper strand
38 stranded perfect matches

**********************                                                                                         **********************
ACCAGAUAGAACUUACACAAUACAACAACUUCACCUCUCAUCCUAUGUGGGCCCUGUUGGUUACAAUACUGGGACCACCAUGGUACACAUAGGAUGAGAGAGAUGUAGUUGUAUUGUGUAAGUUCUAUCUGGU
((((((((((((((((((((((((((.((.((..(((((((((((((((.(((.((.((((..((....))..)))).)).))).))))))))))))))).)).)).))))))))))))))))))))))))))
-------------------------------------------------------------------------------------------------------UGUAGUUGUAUUGUGUAAGUU--------- l=21 a=0 c
-----------CUUACACAAUACAACAACUUC----------------------------------------------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUGGU l=20 a=14 ma
--CAGAUAGAACUUACACAAUA--------------------------------------------------------------------------------------------------------------- l=20 a=0 ma*

------------------------------------------------------------------------------------------------------------------UGUGUAAGUUCUAUCUGG- l=18 a=2 
------------------------------------------------------------------------------------------------------------------UGUGUAAGUUCUAUCUGGU l=19 a=2 
------------------------------------------------------------------------------------------------------------------UGUGUAAGUaCUAUCUGGU l=19 a=1 
------------------------------------------------------------------------------------------------------------------UGUGUAAGUUCUAUCUGGc l=19 a=1 
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUG-- l=18 a=2 
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUGG- l=19 a=3 
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUGa- l=19 a=1 
-----------------------------------------------------------------------------------------------------------------aUGUGUAAGUUCUAUCUGGU l=20 a=1 
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUGGa l=20 a=3 
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUGGU l=20 a=14 (ma)
-----------------------------------------------------------------------------------------------------------------UcGUGUAAGUUCUAUCUGGU l=20 a=1 
-----------------------------------------------------------------------------------------------------------------UUGUGUAAGUUCUAUCUGGc l=20 a=1 
---------------------------------------------------------------------------------------------------------------UAUUGUGUAAGUUCUAUCU--- l=19 a=1 
---------------------------------------------------------------------------------------------------------------UAUUGUGUAAGUUCUAUCUG-- l=20 a=1 
---------------------------------------------------------------------------------------------------------------UAUUGUGUAAGUUCUAUCUGG- l=21 a=3 
---------------------------------------------------------------------------------------------------------------UAUUGUGUAAGUUCUAUCUGGa l=22 a=5 
---------------------------------------------------------------------------------------------------------------UAUUGUGUAAGUUCUAUCUGGU l=22 a=3 
---------------------------------------------------------------------------------------------------------------UAUUGUGUAAGUUCUAUCUGGc l=22 a=2 
-------------------------------------------------------------------------------------------------------------UGUAUUGUGUAAGUUCUAUC---- l=20 a=3 
-------------------------------------------------------------------------------------------------------------UGUAUUGUGUAAGUUCUAUCUGG- l=23 a=3 
---------------------------------------------------------------------------------------------------------UAGUUGUAUUGUGUAAGUUCUA------ l=22 a=1 

mb-01011
ax-1011011
ku-00
ss-101110111100
fn-101
